They include i) flowering-site limitation, with the competition between vegetative and reproductive organs being proposed to have influence on the periodicity in the olive tree; ii) nutritional control, since it has been shown that the storage of nutrients during the “off” year is used for reproductive growth the following year in some species like the pistachio tree; and iii) endogenous hormonal control, since differences in certain endogenous hormones in the olive tree have been reported, with balances between these hormones being considered as key regulators of the alternate bearing. These facts have led to different agronomical strategies to limit or even eliminate the periodicity in SJN 2511 bearing in the olive tree; namely: i) pruning the year before the expected high production, effectively reducing the subsequent fruit yield; ii) reduction of the high-density of the tiny olive fruits at the earliest possible developmental stage, by physical fruit excision; iii) early harvesting of the immature olive fruits, which may help to reduce the alternate bearing severity in some cases, even though at such stage the flowering inhibition has already started; and iv) favoring the biosynthesis and accumulation of carbohydrate reserves in the olive tree, providing a proper nourishment. The induction-initiation cycle of olive tree takes about eight months. It starts in July, while the floral initiation occurs in November and the process is completed in March. As indicated, the olive tree is well known for its extreme alternation, with considerable effect on crop yield. Due to this tendency, difference between “on” and “off” year product yield varies between 5�C30 t/ha. This is therefore a crucial phenomenom to consider for its cultivation management. For example, recent studies have shown that crop loads influence irrigation response, in a complex process where the degree of water deficit and the age of the orchad are interactive factors. Dag et al. showed that the main factor determining flowering and fruit yield in the olive tree was the existence of new mature buds. Since the transition from the vegetative to the reproductive phase is under the tight control of a complex genetic network, discovering control mechanisms of these transitions is crucial to understand the basis of this tendency. OzdemirOzgenturk et al. constructed cDNA Gefitinib libraries from young olive tree leaves and immature fruits, and arbitrarily sequenced 3,734 ESTs to identify the functions of the genes, and annotated them by homologies to known genes. In order to identify microRNA associated to such phase-transition in the olive tree, Donaire et al. sequenced miRNA from the juvenile and adult shoots. They identified several miRNA, and suggested that miR156, miR172 and miR390 were involved in controlling the developmental transition. On the other hand, the microarray analysis for genome-wide transcription analysis is a powerful approach to reveal the changes in the gene expression profiles of organisms in response to different conditions, and thus provides wide-scale insights into the underlying molecular mechanisms. In fact, the transcriptome profiling has been widely used to uncover regulatory processes in several plant species.